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• Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

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Evaluation and comparison of computational tools for RNA-seq isoform quantification, BMC Genomics

PDF] Salmon: Accurate, Versatile and Ultrafast Quantification from RNA-seq Data using Lightweight-Alignment

TAGET: a toolkit for analyzing full-length transcripts from long-read sequencing

PDF] Salmon: Accurate, Versatile and Ultrafast Quantification from RNA-seq Data using Lightweight-Alignment

Salmon-Easy: An alignment-free RNA-seq quantitative strategy based on partial genome indexing

RNA-Seq Workflow

Secondary Data Analysis of RNA-Seq data

Simulation based benchmarking of isoform quantification in single-cell RNA- seq

FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses

LIQA: Long-read Isoform Quantification and Analysis

Secondary Data Analysis of RNA-Seq data